New iPad (3) profile

Hi, not sure if this is to do with the profile or simply the way it converts but in the original screenshot the text is formatted nicely, with correct spacing.

But the converted screenshot shows how there is what almost seems a double spacing and when trying to read it in ibooks it looks awful.

Original is a pdf and i'm trying to convert to epub using ipad 3 profile. Is there any way to make the converted file look half decent to read?

thanks

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